長鏈非編碼RNA數據庫

長鏈非編碼RNA數據庫，又稱長鏈間隔區非編碼RNA數據庫、lncRNA數據庫，是收集了非編碼RNA及其相關表達模式的數據庫。長鏈非編碼RNA是當前生物學和醫學研究的前沿領域和熱點^[1]^[2]。

例子

數據庫名	描述	類型	網站連結	參考文獻
ChIPBase	對長鏈非編碼RNA的表達圖譜和轉錄調控提供全面的註釋和鑑定	數據庫	[1]^{[永久失效連結]}	^[3]
LNCipedia	用於註釋人類的長鏈非編碼RNA的序列和結構	數據庫	[2] （頁面存檔備份，存於互聯網檔案館）	^[4]
lncRNAdb	對功能的長鏈非編碼RNA提供全面的註釋	數據庫	[3] （頁面存檔備份，存於互聯網檔案館）	^[5]
NONCODE	對長鏈非編碼RNA提供綜合的註釋	數據庫	[4] （頁面存檔備份，存於互聯網檔案館）	^[6]
NRED	對長鏈非編碼RNA的表達註釋	數據庫	[5]	^[7]

參考資料

^ John L. Rinn, Howard Y. Chang. Genome regulation by long noncoding RNAs. Annual Review of Biochemistry. 2012, 81: 145–166 [2019-02-12]. ISSN 1545-4509. PMC 3858397  . PMID 22663078. doi:10.1146/annurev-biochem-051410-092902. （原始內容存檔於2018-09-06）.
^ Lance Martin, Howard Y. Chang. Uncovering the role of genomic "dark matter" in human disease. The Journal of Clinical Investigation. 2012-05, 122 (5): 1589–1595 [2019-02-12]. ISSN 1558-8238. PMC 3336981  . PMID 22546862. doi:10.1172/JCI60020. （原始內容存檔於2018-09-06）.
^ Jian-Hua Yang, Jun-Hao Li, Shan Jiang, Hui Zhou, Liang-Hu Qu. ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Research. 2013-01, 41 (Database issue): D177–187 [2019-02-12]. ISSN 1362-4962. PMC 3531181  . PMID 23161675. doi:10.1093/nar/gks1060. （原始內容存檔於2017-05-05）.
^ Pieter-Jan Volders, Kenny Helsens, Xiaowei Wang, Björn Menten, Lennart Martens, Kris Gevaert, Jo Vandesompele, Pieter Mestdagh. LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Research. 2013-01, 41 (Database issue): D246–251 [2019-02-12]. ISSN 1362-4962. PMC 3531107  . PMID 23042674. doi:10.1093/nar/gks915. （原始內容存檔於2014-11-16）.
^ Paulo P. Amaral, Michael B. Clark, Dennis K. Gascoigne, Marcel E. Dinger, John S. Mattick. lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Research. 2011-01, 39 (Database issue): D146–151 [2019-02-12]. ISSN 1362-4962. PMC 3013714  . PMID 21112873. doi:10.1093/nar/gkq1138. （原始內容存檔於2016-09-20）.
^ Dechao Bu, Kuntao Yu, Silong Sun, Chaoyong Xie, Geir Skogerbø, Ruoyu Miao, Hui Xiao, Qi Liao, Haitao Luo, Guoguang Zhao, Haitao Zhao, Zhiyong Liu, Changning Liu, Runsheng Chen, Yi Zhao. NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Research. 2012-01, 40 (Database issue): D210–215 [2019-02-12]. ISSN 1362-4962. PMC 3245065  . PMID 22135294. doi:10.1093/nar/gkr1175. （原始內容存檔於2012-04-25）.
^ Marcel E. Dinger, Ken C. Pang, Tim R. Mercer, Mark L. Crowe, Sean M. Grimmond, John S. Mattick. NRED: a database of long noncoding RNA expression. Nucleic Acids Research. 2009-01, 37 (Database issue): D122–126 [2019-02-12]. ISSN 1362-4962. PMC 2686506  . PMID 18829717. doi:10.1093/nar/gkn617. （原始內容存檔於2017-04-29）.

[1] John L. Rinn, Howard Y. Chang. Genome regulation by long noncoding RNAs. Annual Review of Biochemistry. 2012, 81: 145–166 [2019-02-12]. ISSN 1545-4509. PMC 3858397  . PMID 22663078. doi:10.1146/annurev-biochem-051410-092902. （原始內容存檔於2018-09-06）.

[2] Lance Martin, Howard Y. Chang. Uncovering the role of genomic "dark matter" in human disease. The Journal of Clinical Investigation. 2012-05, 122 (5): 1589–1595 [2019-02-12]. ISSN 1558-8238. PMC 3336981  . PMID 22546862. doi:10.1172/JCI60020. （原始內容存檔於2018-09-06）.

[3] Jian-Hua Yang, Jun-Hao Li, Shan Jiang, Hui Zhou, Liang-Hu Qu. ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Research. 2013-01, 41 (Database issue): D177–187 [2019-02-12]. ISSN 1362-4962. PMC 3531181  . PMID 23161675. doi:10.1093/nar/gks1060. （原始內容存檔於2017-05-05）.

[4] Pieter-Jan Volders, Kenny Helsens, Xiaowei Wang, Björn Menten, Lennart Martens, Kris Gevaert, Jo Vandesompele, Pieter Mestdagh. LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Research. 2013-01, 41 (Database issue): D246–251 [2019-02-12]. ISSN 1362-4962. PMC 3531107  . PMID 23042674. doi:10.1093/nar/gks915. （原始內容存檔於2014-11-16）.

[5] Paulo P. Amaral, Michael B. Clark, Dennis K. Gascoigne, Marcel E. Dinger, John S. Mattick. lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Research. 2011-01, 39 (Database issue): D146–151 [2019-02-12]. ISSN 1362-4962. PMC 3013714  . PMID 21112873. doi:10.1093/nar/gkq1138. （原始內容存檔於2016-09-20）.

[6] Dechao Bu, Kuntao Yu, Silong Sun, Chaoyong Xie, Geir Skogerbø, Ruoyu Miao, Hui Xiao, Qi Liao, Haitao Luo, Guoguang Zhao, Haitao Zhao, Zhiyong Liu, Changning Liu, Runsheng Chen, Yi Zhao. NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Research. 2012-01, 40 (Database issue): D210–215 [2019-02-12]. ISSN 1362-4962. PMC 3245065  . PMID 22135294. doi:10.1093/nar/gkr1175. （原始內容存檔於2012-04-25）.

[7] Marcel E. Dinger, Ken C. Pang, Tim R. Mercer, Mark L. Crowe, Sean M. Grimmond, John S. Mattick. NRED: a database of long noncoding RNA expression. Nucleic Acids Research. 2009-01, 37 (Database issue): D122–126 [2019-02-12]. ISSN 1362-4962. PMC 2686506  . PMID 18829717. doi:10.1093/nar/gkn617. （原始內容存檔於2017-04-29）.

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